Public SmartTables Directory

Welcome to SmartTables

A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web.

[SmartTables Documentation] [Directory of SmartTables Users]

	SmartTable	Description	Organism	Type	Size	Owner	Update Time
1	All compounds of MetaCyc		MetaCyc	proteins, compounds	14394	Joanna Wolthuis	Yesterday 02:08 am
2	Double-slash columns		P. putida KT2440	all-genes	1551	Jeremy Zucker	Wed Aug 22 2018 09:25 am
3	Single Slash columns		P. putida KT2440	all-genes	1551	Jeremy Zucker	Wed Aug 22 2018 09:25 am
4	Pathways of compound from fticr_commonpeaks_allhits_compounds.unique.metacyc.csv		MetaCyc	pathways	83	Jeremy Zucker	Wed Aug 15 2018 05:47 pm
5	Transcriptional profile of Mycobacterium tuberculosis in an in vitro model of intraocular tuberculos	Intracellular M. tb transcripts altered in M. tb metabolic pathways such as biosynthesis, energy, ce...	M. tuberculosis H37Rv	all-genes	1019	Sudhanshu Abhishek	Tue Jul 24 2018 08:23 am
6	13 intermediates of central metabolism		MetaCyc	compounds	13	RouteSearch RouteSearch	Tue Jul 03 2018 05:40 pm
7	New SmartTable with NITROGENASE-RXN		MetaCyc	reactions	1	Neeraj Kumar	Tue Jul 03 2018 09:17 am
8	Filtered rows from Ontology - children of class from New SmartTable with Amino Acids Biosynthesis		E. coli K-12 substr. MG1655	pathways	40	Richard Billington	Mon Jul 02 2018 09:29 am
9	Ontology - children of class from New SmartTable with Amino Acids Biosynthesis		E. coli K-12 substr. MG1655	pathways	72	Richard Billington	Mon Jul 02 2018 09:24 am
10	New SmartTable - 2018-06-28T17:07:57-07:00		E. coli B str. REL606	all-genes	84	Peter Midford	Thu Jun 28 2018 04:30 pm
11	K-12/B Strain ortholog pairs from list	Set of 86 E. coli strain K-12 genes with their orthologs to E. coli strain B.	E. coli K-12 substr. MG1655	all-genes	86	Peter Midford	Wed Jun 27 2018 04:10 pm
12	Genes in Escherichia coli K-12 substr. MG1655 mapped to W3110		E. coli K-12 substr. MG1655	all-genes	4501	Jeremy Zucker	Fri Jun 08 2018 12:31 am
13	Genes in Escherichia coli K-12 substr. MG1655 mapped to W3110		E. coli K-12 substr. MG1655	string	24	Jeremy Zucker	Fri Jun 08 2018 12:02 am
14	Peter's gene list (public)		E. coli K-12 substr. MG1655	all-genes	79	Peter Karp	Thu May 31 2018 10:34 am
15	Enriched with FEPCU from FeC Vs NaC during anaerobic growth up-regulated proteins		K. oxytoca 10-5243	pathways	17	Giuseppe Gallo	Wed May 09 2018 09:52 am
16	Enriched with FEPCU from anaerobic Vs aerobic growth on FeC up-regulated proteins		K. oxytoca 10-5243	pathways	22	Giuseppe Gallo	Wed May 09 2018 09:51 am
17	essential genes of Clostridioides difficile R20291 from Dembek et al. (2015)	This is a table generated from a list of unambiguous essential genes in supplementary table S1 of De...	P. difficile R20291	string, all-genes	403	Ingrid Keseler	Fri May 04 2018 01:36 pm
18	BM25113_Gulucose_cum_mass_genome_view		E. coli K-12 substr. MG1655	transcription-units, promoters, all-genes	854	Neeraj Kumar	Wed Apr 18 2018 12:57 am
19	MetaCyc proteins with no genes and no Uniprot links		MetaCyc	compounds, proteins	2449	Ron Caspi	Tue Apr 10 2018 10:07 am
20	All genes of E. coli K-12 substr. MG1655		E. coli K-12 substr. MG1655	all-genes	4665	Peter Midford	Thu Apr 05 2018 05:05 pm

1 2 3 4 5 6 7 8 Next Show all

Specify List of Organism Databases

A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z

Find in tree:

Find organisms whose property:

Database lists are saved as SmartTables that you can edit from your My SmartTables page.

Tier 1 and Tier 2 databases are displayed with orange and gray backgrounds, respectively.

Current Selection

0 databases or taxonomic groups currently selected.

Note: if you create a user account and log in, you can save your database lists for next time.