Public SmartTables Directory

Welcome to SmartTables

A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web.

[SmartTables Documentation]  [Directory of SmartTables Users]

Sort upSort down SmartTable
Sort upSort down Description
Organism
Type
Size
Sort upSort down Owner
Sort upSort down Update Time
1All instances of Genes in Escherichia coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
all-genes
4557
Jeremy ZuckerSat Dec 02 2023 10:55 am
2Linear regulators of E. coli
Escherichia coli K-12 substr. MG1655
all-genes
473
Jeremy ZuckerThu Nov 30 2023 12:23 am
3E. coli K-12 substr. MG1655 genes with "other stop codons"
Escherichia coli K-12 substr. MG1655
all-genes
248
Gabriella MachadoSun Nov 19 2023 05:44 am
4Pwys for Pathway Collage test.
Escherichia coli K-12 substr. MG1655
pathways
5
Suzanne PaleyThu Nov 02 2023 09:17 am
5All pathways of S. cerevisiae S288c_withenzymes
Saccharomyces cerevisiae S288c
pathways
343
nir cohenWed Nov 01 2023 05:35 am
6Copy of All Protein-Complexes and Their Components in Escherichia coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
string, proteins
980
Edward CatoiuThu Oct 26 2023 08:03 pm
7EcoCyc ribonucleases w/ references & summaries
Escherichia coli K-12 substr. MG1655
proteins
54
Lisa MooreThu Oct 12 2023 05:04 pm
8Cyanobacteria List: Representative Cyanobacteria 2

ocelot-kb
69
Jeff ElhaiThu Oct 12 2023 01:40 pm
9Copy of Metacyc Proteins for Query Bio
MetaCyc
proteins
1
Anup KhanalWed Oct 11 2023 10:33 am
10Metacyc Proteins for Query Bio
MetaCyc
proteins
292
Anup KhanalWed Oct 11 2023 09:12 am
11Genes of E. coli K-12 substr. MG1655 with TAG stop codon
Escherichia coli K-12 substr. MG1655
all-genes
316
Gabriella MachadoThu Sep 28 2023 11:27 am
12Cyanobacteria List: Curated Cyanobacterial DatabasesA list of the Tier 2 (curated) BioCyc cyanobacterial databases.

ocelot-kb
5
Peter KarpSun Sep 24 2023 08:45 pm
13New SmartTable with nhaA
Escherichia coli K-12 substr. MG1655
all-genes
6
YIMING HUANGSun Sep 10 2023 09:55 pm
14Enriched from Dark Green & Purple Transcription Genes (12 Results)
Abiotrophia defectiva ATCC 49176
pathways
12
Olivia NobleFri Sep 08 2023 01:26 pm
15Copy of all gene products that have one of the following evidence codes: EV-COMP, EV-IC, EV-EXP
Synechocystis sp. PCC 6803 substr. Kazusa
all-genes
322
Lisa MooreFri Sep 08 2023 01:20 pm
16SmT shared: genes-without-TUs SmartTable - 2023-08-28T17:59:16 -8
Escherichia coli K-12 substr. MG1655
all-genes
158
helio sunMon Aug 28 2023 08:28 pm
17GSE71562 RNA-Seq anaerobic-aerobic transitionThis SmartTable is an example generated via the Cellular Dashboard. The data is derived from von Wulffen et al, PMID 27384956, and has been normalized using the TPM approach. To view this dataset using the Cellular Dashboard, see http://biocyc.org/dashboard/dashboard.html?st=samo-463-3699298732.
Escherichia coli K-12 substr. MG1655
gene-fragments, symbol, all-genes
4231
Suzanne PaleyFri Aug 18 2023 09:49 am
18Genes categorias 1, 4A e 5A
Escherichia coli K-12 substr. MG1655
all-genes
68
Gabriella MachadoMon Aug 07 2023 02:27 pm
19updated 383 genes 417 EC numbers
Methanocaldococcus jannaschii DSM 2661
reactions, proteins
417
Christos OuzounisFri Aug 04 2023 11:02 am
20Sequences of Promoters regulated by RpoS and RpoDHow this SmartTable was generated: 1) From the source table, I clicked on the plus icon for the Recognized-Promoters to get a new ST w/ the promoters (you could also have started from the Special ST for all promoters, added the property Binds-Sigma-Factor and filtered based on that column). 2) Added the transform column "Sequence - coordinates of DNA region". Unfortunately that just gives you a sequence region one base long, the transcription start site, so it has to be extended. 3) Selected the sequence region column, and added the transform column "Sequence - modify coordinates of DNA region". I added 60 bases upstream and 25 bases downstream, which is what we show when we draw our promoter sequences on our transcription-unit pages. 4) I selected the new region column and added the transform "Sequence - sequence of DNA region". 5) I tweaked the column names to make them more comprehensible.
Escherichia coli K-12 substr. MG1655
promoters
2241
Suzanne PaleyTue Jul 18 2023 08:42 am
 1 2 3 ...15 16 17 Next Show all 

Report Errors or Provide Feedback
Page generated by Pathway Tools version 27.5 (software by SRI International) on Fri Dec 8, 2023, BIOCYC18B.
HumanCyc version 27.5.